Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488524_0198 | Not Available | Negative | 297155 - 298762 | 60370.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0199 | Not Available | Negative | 298801 - 301956 | 114825.0 |
| glycosyl hydrolase family 88 | SAMN04488524_0200 | Not Available | Positive | 302254 - 303462 | 45789.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0201 | Not Available | Positive | 303706 - 306774 | 111008.0 |
| susd and ragb outer membrane lipoprotein | SAMN04488524_0202 | Not Available | Positive | 306807 - 308387 | 57449.6 |
| arylsulfatase a | SAMN04488524_0203 | Not Available | Negative | 308447 - 310045 | 59773.8 |
| hypothetical protein | SAMN04488524_0204 | Not Available | Negative | 310054 - 311931 | 69514.6 |
| protein of unknown function | SAMN04488524_0205 | Not Available | Negative | 312350 - 313345 | 36193.5 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488524_0206 | Not Available | Positive | 313676 - 315547 | 67350.4 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488524_0207 | Not Available | Positive | 315606 - 316145 | 20533.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

