Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein tyrosine phosphatase | SAMN04488524_2304 | Not Available | Positive | 2742306 - 2742746 | 16814.3 |
| protein of unknown function | SAMN04488524_2305 | Not Available | Positive | 2742749 - 2743309 | 20943.2 |
| hypothetical protein | SAMN04488524_2306 | Not Available | Positive | 2743420 - 2744049 | 23099.4 |
| c-terminal processing peptidase-1. serine peptidase. merops family s41a | SAMN04488524_2307 | Not Available | Positive | 2744210 - 2746390 | 80913.7 |
| regulator of protease activity hflc, stomatin/prohibitin superfamily | SAMN04488524_2308 | Not Available | Negative | 2746463 - 2747401 | 34963.3 |
| hypothetical protein | SAMN04488524_2309 | Not Available | Positive | 2747538 - 2747723 | 6602.31 |
| capsule synthesis protein pga_cap | SAMN04488524_2310 | Not Available | Negative | 2747720 - 2748817 | 39468.6 |
| lipoprotein spr | SAMN04488524_2311 | Not Available | Negative | 2748822 - 2749376 | 20772.9 |
| pyruvate dehydrogenase e1 component alpha subunit | SAMN04488524_2312 | Not Available | Positive | 2749772 - 2750767 | 37058.3 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | SAMN04488524_2313 | Not Available | Positive | 2750797 - 2752449 | 57450.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

