Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein rada/sms | SAMN04488524_2264 | Not Available | Negative | 2698358 - 2699734 | 50426.9 |
| ribonuclease g | SAMN04488524_2265 | Not Available | Negative | 2700028 - 2701578 | 58546.1 |
| tpr repeat-containing protein | SAMN04488524_2266 | Not Available | Negative | 2701834 - 2702703 | 31146.8 |
| dna-binding protein hu-beta | SAMN04488524_2267 | Not Available | Negative | 2702709 - 2703011 | 11103.6 |
| a/g-specific dna-adenine glycosylase | SAMN04488524_2268 | Not Available | Positive | 2703184 - 2704233 | 40419.4 |
| single-strand binding protein | SAMN04488524_2269 | Not Available | Positive | 2704248 - 2704679 | 15971.8 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | SAMN04488524_2270 | Not Available | Negative | 2704713 - 2706551 | 67632.8 |
| protein of unknown function | SAMN04488524_2271 | Not Available | Negative | 2706639 - 2708114 | 53279.4 |
| starch synthase | SAMN04488524_2272 | Not Available | Negative | 2708136 - 2708966 | 31922.2 |
| pantoate--beta-alanine ligase | SAMN04488524_2273 | Not Available | Positive | 2709086 - 2709952 | 31871.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

