Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_2244 | Not Available | Positive | 2671799 - 2675185 | 122803.0 |
| starch-binding associating with outer membrane | SAMN04488524_2245 | Not Available | Positive | 2675191 - 2676912 | 63498.6 |
| polygalacturonase | SAMN04488524_2246 | Not Available | Positive | 2676973 - 2679876 | 105274.0 |
| lsu ribosomal protein l13p | SAMN04488524_2247 | Not Available | Positive | 2680093 - 2680536 | 16273.0 |
| small subunit ribosomal protein s9 | SAMN04488524_2248 | Not Available | Positive | 2680548 - 2680934 | 14223.5 |
| ssu ribosomal protein s2p | SAMN04488524_2249 | Not Available | Positive | 2680953 - 2681777 | 30419.8 |
| elongation factor ts | SAMN04488524_2250 | Not Available | Positive | 2681799 - 2682638 | 29964.9 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN04488524_2251 | Not Available | Positive | 2682731 - 2683837 | 39894.3 |
| uridylate kinase | SAMN04488524_2252 | Not Available | Positive | 2683952 - 2684659 | 25824.5 |
| ribosome recycling factor | SAMN04488524_2253 | Not Available | Positive | 2684700 - 2685263 | 20928.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

