Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc carboxypeptidase | SAMN04488524_2234 | Not Available | Negative | 2661094 - 2662833 | 66611.4 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488524_2235 | Not Available | Negative | 2662851 - 2663555 | 25821.9 |
| tripeptide aminopeptidase | SAMN04488524_2236 | Not Available | Positive | 2663622 - 2664875 | 45811.2 |
| methyltransferase domain-containing protein | SAMN04488524_2237 | Not Available | Negative | 2664895 - 2665590 | 26246.4 |
| metallo-beta-lactamase family protein | SAMN04488524_2238 | Not Available | Negative | 2665617 - 2667014 | 51608.9 |
| ytxh-like protein | SAMN04488524_2239 | Not Available | Negative | 2667032 - 2667238 | 7225.84 |
| hypothetical protein | SAMN04488524_2240 | Not Available | Negative | 2667380 - 2667793 | 15103.9 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_2241 | Not Available | Negative | 2668045 - 2669550 | 57921.9 |
| sigma-70 region 2 | SAMN04488524_2242 | Not Available | Positive | 2669893 - 2670477 | 23102.1 |
| fecr family protein | SAMN04488524_2243 | Not Available | Positive | 2670553 - 2671686 | 42241.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

