Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein ompa | SAMN04488524_2224 | Not Available | Positive | 2652368 - 2654128 | 65913.3 |
| nagd protein | SAMN04488524_2225 | Not Available | Negative | 2654135 - 2654908 | 28211.2 |
| thiamine pyrophosphokinase | SAMN04488524_2226 | Not Available | Positive | 2655010 - 2655588 | 21634.8 |
| peptidase family m28 | SAMN04488524_2227 | Not Available | Negative | 2655620 - 2656570 | 34914.6 |
| protein of unknown function | SAMN04488524_2228 | Not Available | Negative | 2656598 - 2657719 | 42412.7 |
| rhodanese-related sulfurtransferase | SAMN04488524_2229 | Not Available | Positive | 2657889 - 2658209 | 11976.4 |
| hypothetical protein | SAMN04488524_2230 | Not Available | Positive | 2658212 - 2658400 | 7119.12 |
| l-alanine-dl-glutamate epimerase | SAMN04488524_2231 | Not Available | Negative | 2658387 - 2659424 | 38207.3 |
| hypothetical protein | SAMN04488524_2232 | Not Available | Positive | 2659488 - 2660477 | 37829.5 |
| membrane associated serine protease, rhomboid family | SAMN04488524_2233 | Not Available | Negative | 2660474 - 2661091 | 23292.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

