Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal recognition particle subunit ffh/srp54 (srp54) | SAMN04488524_2190 | Not Available | Negative | 2599476 - 2600816 | 49214.1 |
| protein of unknown function | SAMN04488524_2191 | Not Available | Negative | 2600901 - 2601956 | 39963.9 |
| hypothetical protein | SAMN04488524_2192 | Not Available | Negative | 2602020 - 2602343 | 13082.4 |
| hypothetical protein | SAMN04488524_2193 | Not Available | Negative | 2602340 - 2603092 | 28619.7 |
| flagellum-specific peptidoglycan hydrolase flgj | SAMN04488524_2194 | Not Available | Negative | 2603140 - 2604054 | 34343.9 |
| flagellum-specific peptidoglycan hydrolase flgj | SAMN04488524_2195 | Not Available | Negative | 2604054 - 2604734 | 25959.9 |
| predicted o-methyltransferase yrrm | SAMN04488524_2196 | Not Available | Negative | 2604738 - 2605352 | 23149.9 |
| putative holliday junction resolvase | SAMN04488524_2197 | Not Available | Negative | 2605383 - 2605799 | 15857.3 |
| dna polymerase-3 subunit delta' | SAMN04488524_2198 | Not Available | Positive | 2606020 - 2607168 | 43531.5 |
| cell fate regulator yaat, psp1 superfamily (controls sporulation, competence, biofilm development) | SAMN04488524_2199 | Not Available | Positive | 2607170 - 2608591 | 53388.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

