Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold-shock dna-binding protein family | SAMN04488524_2120 | Not Available | Positive | 2527372 - 2527563 | 7014.34 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488524_2121 | Not Available | Negative | 2527634 - 2528431 | 29933.2 |
| hypothetical protein | SAMN04488524_2122 | Not Available | Positive | 2528589 - 2531900 | 126190.0 |
| rrna maturation rnase ybey | SAMN04488524_2123 | Not Available | Positive | 2531911 - 2532345 | 16777.0 |
| atp-binding cassette, subfamily f, uup | SAMN04488524_2124 | Not Available | Positive | 2532639 - 2534501 | 70890.7 |
| trna uridine 5-carboxymethylaminomethyl modification enzyme | SAMN04488524_2125 | Not Available | Positive | 2534624 - 2536513 | 70422.3 |
| ig-like domain-containing protein | SAMN04488524_2126 | Not Available | Positive | 2536656 - 2538284 | 61507.9 |
| carbonic anhydrase or acetyltransferase, isoleucine patch superfamily | SAMN04488524_2127 | Not Available | Negative | 2538285 - 2538794 | 18455.5 |
| l-aspartate oxidase | SAMN04488524_2128 | Not Available | Negative | 2538798 - 2540384 | 59357.1 |
| quinolinate synthetase | SAMN04488524_2129 | Not Available | Positive | 2540929 - 2541927 | 37064.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

