Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN04488524_2100 | Not Available | Positive | 2505634 - 2506356 | 27098.9 |
| exodeoxyribonuclease-3 | SAMN04488524_2101 | Not Available | Positive | 2506360 - 2507130 | 29569.3 |
| imidazolonepropionase | SAMN04488524_2102 | Not Available | Positive | 2507133 - 2508377 | 44876.1 |
| formiminoglutamase | SAMN04488524_2103 | Not Available | Positive | 2508377 - 2509348 | 34920.1 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488524_2104 | Not Available | Negative | 2509396 - 2511210 | 66451.9 |
| 5-formyltetrahydrofolate cyclo-ligase | SAMN04488524_2105 | Not Available | Negative | 2511315 - 2511902 | 22024.8 |
| translation elongation factor p (ef-p) | SAMN04488524_2106 | Not Available | Negative | 2512245 - 2512805 | 21332.5 |
| abc transporter | SAMN04488524_2107 | Not Available | Negative | 2512962 - 2513576 | 22968.6 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | SAMN04488524_2108 | Not Available | Negative | 2513586 - 2514371 | 28505.4 |
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | SAMN04488524_2109 | Not Available | Negative | 2514368 - 2515777 | 51913.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

