Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN04488524_2040 | Not Available | Positive | 2445919 - 2446623 | 25920.0 |
| dna polymerase i | SAMN04488524_2041 | Not Available | Negative | 2446695 - 2449511 | 104999.0 |
| hypothetical protein | SAMN04488524_2042 | Not Available | Positive | 2449611 - 2450270 | 23591.3 |
| dna-3-methyladenine glycosylase i | SAMN04488524_2043 | Not Available | Negative | 2450271 - 2450831 | 21462.0 |
| methylated-dna-protein-cysteine methyltransferase related protein | SAMN04488524_2044 | Not Available | Negative | 2450836 - 2451162 | 12064.8 |
| trna (guanine-n7-)-methyltransferase | SAMN04488524_2045 | Not Available | Negative | 2451162 - 2451812 | 25199.2 |
| gdp-l-fucose synthase | SAMN04488524_2046 | Not Available | Positive | 2451924 - 2452862 | 35081.1 |
| lysr family transcriptional regulator, hydrogen peroxide-inducible genes activator | SAMN04488524_2047 | Not Available | Positive | 2452901 - 2453833 | 35371.6 |
| superoxide dismutase, fe-mn family | SAMN04488524_2048 | Not Available | Negative | 2454155 - 2454760 | 22344.3 |
| trna(adenine34) deaminase | SAMN04488524_2049 | Not Available | Negative | 2454875 - 2455348 | 17139.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

