Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytidine1402-2'-o)-methyltransferase | SAMN04488524_2020 | Not Available | Negative | 2420941 - 2421654 | 26331.0 |
| hypothetical protein | SAMN04488524_2021 | Not Available | Positive | 2421914 - 2423245 | 51010.8 |
| bacterial peptide chain release factor 3 (brf-3) | SAMN04488524_2022 | Not Available | Positive | 2423316 - 2424896 | 59722.4 |
| peroxiredoxin | SAMN04488524_2023 | Not Available | Negative | 2424941 - 2426080 | 41611.0 |
| susd family protein | SAMN04488524_2024 | Not Available | Negative | 2426092 - 2427507 | 52470.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_2025 | Not Available | Negative | 2427518 - 2431009 | 127283.0 |
| fecr family protein | SAMN04488524_2026 | Not Available | Negative | 2431140 - 2432270 | 41637.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_2027 | Not Available | Negative | 2432380 - 2432961 | 22317.0 |
| argininosuccinate lyase | SAMN04488524_2028 | Not Available | Negative | 2433627 - 2434958 | 49776.5 |
| acetylornithine deacetylase | SAMN04488524_2029 | Not Available | Negative | 2434978 - 2436045 | 39369.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

