Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tatd dnase family protein | SAMN04488524_2000 | Not Available | Negative | 2402966 - 2403622 | 24266.8 |
| beta-glucosidase | SAMN04488524_2001 | Not Available | Negative | 2403632 - 2405338 | 63103.8 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488524_2002 | Not Available | Positive | 2405641 - 2406255 | 22143.6 |
| hypothetical protein | SAMN04488524_2003 | Not Available | Positive | 2406397 - 2406576 | 6706.76 |
| glycerol kinase | SAMN04488524_2004 | Not Available | Positive | 2406711 - 2408201 | 53800.3 |
| glycerol uptake facilitator protein | SAMN04488524_2005 | Not Available | Positive | 2408234 - 2408965 | 25297.3 |
| two component transcriptional regulator, lyttr family | SAMN04488524_2006 | Not Available | Negative | 2409056 - 2409751 | 26344.3 |
| outer membrane protein tolc | SAMN04488524_2007 | Not Available | Positive | 2409900 - 2411309 | 52809.9 |
| hlyd family secretion protein | SAMN04488524_2008 | Not Available | Positive | 2411326 - 2412279 | 35288.3 |
| abc-2 type transport system permease protein | SAMN04488524_2009 | Not Available | Positive | 2412286 - 2413488 | 44804.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

