Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488524_1990 | Not Available | Positive | 2386354 - 2386791 | 16591.3 |
| imidazolonepropionase | SAMN04488524_1991 | Not Available | Positive | 2386881 - 2389604 | 100120.0 |
| imidazolonepropionase | SAMN04488524_1992 | Not Available | Positive | 2389597 - 2390907 | 47236.8 |
| lrp/asnc family transcriptional regulator, regulator for asna, asnc and gida | SAMN04488524_1993 | Not Available | Positive | 2391460 - 2391933 | 17902.9 |
| uncharacterized protein | SAMN04488524_1994 | Not Available | Negative | 2391940 - 2394255 | 85225.5 |
| pyruvate dehydrogenase e1 component beta subunit | SAMN04488524_1995 | Not Available | Negative | 2394393 - 2395379 | 35997.6 |
| pd-(d/e)xk nuclease superfamily protein | SAMN04488524_1996 | Not Available | Negative | 2395537 - 2398392 | 107980.0 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN04488524_1997 | Not Available | Negative | 2398395 - 2401613 | 121509.0 |
| thioredoxin-related protein | SAMN04488524_1998 | Not Available | Positive | 2401679 - 2402173 | 18134.0 |
| trna a37 threonylcarbamoyladenosine dehydratase | SAMN04488524_1999 | Not Available | Negative | 2402183 - 2402962 | 28596.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

