Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-containing alcohol dehydrogenase | SAMN04488524_1950 | Not Available | Negative | 2341420 - 2342568 | 41791.6 |
| glutamine synthetase | SAMN04488524_1951 | Not Available | Negative | 2342578 - 2343936 | 51030.9 |
| ethanolamine permease | SAMN04488524_1952 | Not Available | Negative | 2343933 - 2345249 | 46978.1 |
| glucosamine-6-phosphate deaminase | SAMN04488524_1953 | Not Available | Positive | 2345469 - 2347388 | 72422.3 |
| predicted acyltransferase | SAMN04488524_1954 | Not Available | Positive | 2347458 - 2348615 | 42747.1 |
| zinc protease | SAMN04488524_1955 | Not Available | Positive | 2348714 - 2351575 | 105708.0 |
| uncharacterized lipoprotein yddw, upf0748 family | SAMN04488524_1956 | Not Available | Negative | 2351586 - 2353145 | 58871.7 |
| hypothetical protein | SAMN04488524_1957 | Not Available | Positive | 2353329 - 2354237 | 34143.9 |
| hamp domain-containing protein | SAMN04488524_1958 | Not Available | Negative | 2354229 - 2357957 | 142329.0 |
| [acyl-carrier-protein] s-malonyltransferase | SAMN04488524_1959 | Not Available | Negative | 2357990 - 2358868 | 31221.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

