Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1940 | Not Available | Negative | 2327223 - 2330318 | 112134.0 |
| transcriptional regulator, deor family | SAMN04488524_1941 | Not Available | Positive | 2330599 - 2331345 | 27417.3 |
| hypothetical protein | SAMN04488524_1942 | Not Available | Negative | 2331471 - 2332124 | 25757.4 |
| protein of unknown function | SAMN04488524_1943 | Not Available | Negative | 2332275 - 2332772 | 18779.6 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488524_1944 | Not Available | Negative | 2332922 - 2333221 | 11034.0 |
| starch-binding associating with outer membrane | SAMN04488524_1945 | Not Available | Negative | 2333490 - 2334740 | 44536.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1946 | Not Available | Negative | 2334820 - 2337981 | 113888.0 |
| anhydro-n-acetylmuramic acid kinase | SAMN04488524_1947 | Not Available | Negative | 2338065 - 2339264 | 43499.2 |
| acyl-coa reductase | SAMN04488524_1948 | Not Available | Negative | 2339275 - 2340639 | 50441.2 |
| putative glutamine amidotransferase | SAMN04488524_1949 | Not Available | Negative | 2340636 - 2341352 | 27607.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

