Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN04488524_0158 | Not Available | Negative | 232221 - 233246 | 37890.5 |
| xylulokinase | SAMN04488524_0159 | Not Available | Positive | 233356 - 234831 | 53753.1 |
| d-xylose isomerase | SAMN04488524_0160 | Not Available | Positive | 234849 - 236180 | 50020.7 |
| thioredoxin | SAMN04488524_0161 | Not Available | Negative | 236339 - 237721 | 52047.4 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_0162 | Not Available | Negative | 237734 - 238894 | 42651.4 |
| peroxiredoxin | SAMN04488524_0163 | Not Available | Negative | 238906 - 240033 | 41650.8 |
| susd family protein | SAMN04488524_0164 | Not Available | Negative | 240063 - 241514 | 54194.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0165 | Not Available | Negative | 241532 - 245260 | 136437.0 |
| fecr family protein | SAMN04488524_0166 | Not Available | Negative | 245448 - 246542 | 40435.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0167 | Not Available | Negative | 246631 - 247209 | 21950.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

