Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc protease | SAMN04488524_1900 | Not Available | Negative | 2263784 - 2266567 | 104304.0 |
| muts domain iii | SAMN04488524_1901 | Not Available | Negative | 2266570 - 2269239 | 99807.6 |
| abc-2 type transport system permease protein | SAMN04488524_1902 | Not Available | Negative | 2269242 - 2271545 | 85595.2 |
| abc-2 type transport system atp-binding protein | SAMN04488524_1903 | Not Available | Negative | 2271561 - 2272484 | 34056.4 |
| hypothetical protein | SAMN04488524_1904 | Not Available | Negative | 2272599 - 2273357 | 27714.3 |
| susd family protein | SAMN04488524_1905 | Not Available | Negative | 2273388 - 2274833 | 53522.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1906 | Not Available | Negative | 2274837 - 2278205 | 122825.0 |
| fecr family protein | SAMN04488524_1907 | Not Available | Negative | 2278443 - 2279564 | 40964.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_1908 | Not Available | Negative | 2279648 - 2280247 | 22758.6 |
| lysophospholipase l1 | SAMN04488524_1909 | Not Available | Negative | 2280433 - 2281086 | 25051.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

