Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488524_1890 | Not Available | Negative | 2244300 - 2245853 | 59573.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1891 | Not Available | Negative | 2245866 - 2249012 | 115847.0 |
| protein of unknown function | SAMN04488524_1892 | Not Available | Negative | 2249066 - 2250115 | 39681.5 |
| fasciclin domain-containing protein | SAMN04488524_1893 | Not Available | Negative | 2250121 - 2250780 | 24759.7 |
| starch-binding associating with outer membrane | SAMN04488524_1894 | Not Available | Negative | 2250785 - 2252314 | 57076.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1895 | Not Available | Negative | 2252325 - 2255285 | 110906.0 |
| signal transduction histidine kinase | SAMN04488524_1896 | Not Available | Positive | 2255705 - 2259805 | 153854.0 |
| uncharacterized conserved protein, contains gh25 family domain | SAMN04488524_1897 | Not Available | Positive | 2259906 - 2260616 | 25783.4 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN04488524_1898 | Not Available | Negative | 2260715 - 2261479 | 29802.6 |
| abc-2 type transport system permease protein | SAMN04488524_1899 | Not Available | Negative | 2261482 - 2263773 | 85686.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

