Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homospermidine synthase (spermidine-specific) | SAMN04488524_1848 | Not Available | Negative | 2190970 - 2191950 | 37026.3 |
| hypothetical protein | SAMN04488524_1849 | Not Available | Positive | 2192064 - 2193194 | 42559.6 |
| predicted o-methyltransferase yrrm | SAMN04488524_1850 | Not Available | Negative | 2193207 - 2193989 | 29868.9 |
| transglutaminase-like superfamily protein | SAMN04488524_1851 | Not Available | Positive | 2194025 - 2194894 | 33639.1 |
| acetyl esterase/lipase | SAMN04488524_1852 | Not Available | Negative | 2194889 - 2195776 | 31987.3 |
| hypothetical protein | SAMN04488524_1854 | Not Available | Negative | 2196955 - 2197458 | 17335.2 |
| glucose-6-phosphate isomerase | SAMN04488524_1855 | Not Available | Positive | 2197542 - 2199188 | 61734.5 |
| protein of unknown function | SAMN04488524_1856 | Not Available | Positive | 2199293 - 2199823 | 19553.5 |
| glutamine cyclotransferase | SAMN04488524_1857 | Not Available | Negative | 2199825 - 2200910 | 40045.8 |
| putative endonuclease | SAMN04488524_1858 | Not Available | Negative | 2200891 - 2201253 | 13965.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

