Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_1767 | Not Available | Negative | 2098281 - 2100788 | 93743.2 |
| hypothetical protein | SAMN04488524_1768 | Not Available | Negative | 2100965 - 2101462 | 18567.6 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488524_1769 | Not Available | Negative | 2101575 - 2102174 | 22897.5 |
| transcriptional regulator, abiei antitoxin, type iv ta system | SAMN04488524_1770 | Not Available | Positive | 2102585 - 2103223 | 24201.7 |
| nucleotidyl transferase abieii toxin, type iv ta system | SAMN04488524_1771 | Not Available | Positive | 2103220 - 2104074 | 33463.1 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488524_1772 | Not Available | Negative | 2104090 - 2104866 | 30049.8 |
| hypothetical protein | SAMN04488524_1773 | Not Available | Negative | 2105019 - 2105570 | 20817.9 |
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN04488524_1774 | Not Available | Negative | 2105643 - 2107079 | 54271.9 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN04488524_1775 | Not Available | Negative | 2107125 - 2108150 | 39902.8 |
| pp_01738 | SAMN04488524_1776 | Not Available | Positive | 2108213 - 2109706 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

