Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488524_1707 | Not Available | Negative | 2021157 - 2022272 | 41672.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_1708 | Not Available | Negative | 2022363 - 2022929 | 21842.6 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN04488524_1709 | Not Available | Positive | 2023119 - 2024258 | 42738.6 |
| short-chain dehydrogenase | SAMN04488524_1710 | Not Available | Positive | 2024270 - 2025058 | 28781.0 |
| formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domain | SAMN04488524_1711 | Not Available | Negative | 2025059 - 2026186 | 40853.8 |
| uncharacterized conserved protein, duf1501 family | SAMN04488524_1712 | Not Available | Negative | 2026247 - 2027515 | 45546.4 |
| uncharacterized conserved protein, duf1800 family | SAMN04488524_1713 | Not Available | Negative | 2027535 - 2029529 | 74049.0 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488524_1714 | Not Available | Negative | 2029587 - 2030036 | 16826.2 |
| cupin-like domain-containing protein | SAMN04488524_1715 | Not Available | Positive | 2030281 - 2031162 | 34547.5 |
| cupin-like domain-containing protein | SAMN04488524_1716 | Not Available | Positive | 2031277 - 2032158 | 33566.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

