Pedobacter africanus strain DSM 12126

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter africanus strain DSM 12126 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may facilitate its movement in various environments, potentially aiding in colonization and interaction with other microorganisms. The strain is noted to possess a single replicon, which indicates a streamlined genetic organization. This can be an advantage for efficient replication and stability of genetic material, allowing for rapid adaptation to environmental changes. Pedobacter africanus is documented under the accession FWXT00000000.1, providing a reference for genomic studies and comparative analyses with other strains or species within the genus Pedobacter. The ecological role of Pedobacter africanus, like other members of the genus, is likely linked to its involvement in the degradation of organic matter and nutrient cycling in soil and aquatic environments. The presence of flagella may enhance its ecological interactions, facilitating its ability to thrive in diverse habitats. Overall, the traits of Pedobacter africanus strain DSM 12126 underscore its potential significance in microbiological studies and ecological research, particularly in understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter africanus
Strainstrain DSM 12126

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter africanus strain DSM 12126 genome assembly, contig:

Gene Summary

Adenine Count

1609729 bp

Thymine Count

1628936 bp

Guanine Count

1235949 bp

Cytosine Count

1248253 bp

Genome Length

5722867 bp

Protein-coding Genes

4691 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fecr family proteinSAMN04488524_1707Not AvailableNegative2021157 - 202227241672.9
rna polymerase sigma-70 factor, ecf subfamilySAMN04488524_1708Not AvailableNegative2022363 - 202292921842.6
oxygen-independent coproporphyrinogen-3 oxidaseSAMN04488524_1709Not AvailablePositive2023119 - 202425842738.6
short-chain dehydrogenaseSAMN04488524_1710Not AvailablePositive2024270 - 202505828781.0
formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domainSAMN04488524_1711Not AvailableNegative2025059 - 202618640853.8
uncharacterized conserved protein, duf1501 familySAMN04488524_1712Not AvailableNegative2026247 - 202751545546.4
uncharacterized conserved protein, duf1800 familySAMN04488524_1713Not AvailableNegative2027535 - 202952974049.0
uncharacterized conserved protein yndb, ahsa1/start domainSAMN04488524_1714Not AvailableNegative2029587 - 203003616826.2
cupin-like domain-containing proteinSAMN04488524_1715Not AvailablePositive2030281 - 203116234547.5
cupin-like domain-containing proteinSAMN04488524_1716Not AvailablePositive2031277 - 203215833566.6

Displaying genes 1691 – 1700 of 4757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.