Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488524_0138 | Not Available | Negative | 198080 - 199498 | 52702.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0139 | Not Available | Negative | 199508 - 202606 | 115116.0 |
| hypothetical protein | SAMN04488524_0140 | Not Available | Negative | 202742 - 203530 | 29360.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0141 | Not Available | Negative | 203576 - 204145 | 21705.3 |
| alpha-l-rhamnosidase | SAMN04488524_0142 | Not Available | Negative | 204319 - 206484 | 82271.5 |
| solute:na+ symporter, sss family | SAMN04488524_0143 | Not Available | Negative | 206496 - 208085 | 58093.8 |
| predicted dehydrogenase | SAMN04488524_0144 | Not Available | Negative | 208070 - 209149 | 40763.5 |
| protein of unknown function | SAMN04488524_0145 | Not Available | Negative | 209159 - 211690 | 95283.7 |
| sugar phosphate isomerase/epimerase | SAMN04488524_0146 | Not Available | Negative | 211707 - 212612 | 33110.8 |
| acetyl xylan esterase (axe1) | SAMN04488524_0147 | Not Available | Negative | 212609 - 214012 | 52577.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

