Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-related protein | SAMN04488524_1697 | Not Available | Negative | 2007709 - 2008794 | 41017.1 |
| helix-turn-helix domain-containing protein | SAMN04488524_1698 | Not Available | Negative | 2008867 - 2009109 | 9250.2 |
| thioredoxin-like domain-containing protein | SAMN04488524_1699 | Not Available | Negative | 2009128 - 2010264 | 43632.9 |
| aspartyl protease | SAMN04488524_1700 | Not Available | Negative | 2010261 - 2011178 | 33314.5 |
| thioredoxin-like | SAMN04488524_1701 | Not Available | Negative | 2011201 - 2012355 | 42645.2 |
| peroxiredoxin | SAMN04488524_1702 | Not Available | Negative | 2012414 - 2013799 | 51741.2 |
| pkd-like family protein | SAMN04488524_1703 | Not Available | Negative | 2013864 - 2015378 | 56460.5 |
| protein of unknown function | SAMN04488524_1704 | Not Available | Negative | 2015403 - 2016167 | 28163.1 |
| starch-binding associating with outer membrane | SAMN04488524_1705 | Not Available | Negative | 2016181 - 2017620 | 53873.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1706 | Not Available | Negative | 2017633 - 2020998 | 124229.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

