Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transmembrane family 220, helix | SAMN04488524_1627 | Not Available | Positive | 1929941 - 1930312 | 14229.7 |
| hypothetical protein | SAMN04488524_1628 | Not Available | Positive | 1930321 - 1931031 | 27073.7 |
| hypothetical protein | SAMN04488524_1629 | Not Available | Positive | 1931034 - 1932020 | 37017.0 |
| 4-hydroxybenzoate polyprenyltransferase | SAMN04488524_1630 | Not Available | Positive | 1932032 - 1932940 | 32304.0 |
| 3-dehydroquinate synthase | SAMN04488524_1631 | Not Available | Positive | 1932958 - 1934133 | 43386.6 |
| hypothetical protein | SAMN04488524_1632 | Not Available | Positive | 1934135 - 1935343 | 46071.8 |
| predicted pyrophosphatase or phosphodiesterase, alkp superfamily | SAMN04488524_1633 | Not Available | Positive | 1935374 - 1936726 | 51142.3 |
| phospholipase c | SAMN04488524_1634 | Not Available | Positive | 1936766 - 1939153 | 89819.8 |
| hypothetical protein | SAMN04488524_1635 | Not Available | Negative | 1939131 - 1939394 | 9678.19 |
| ribosomal protein s18 acetylase rimi | SAMN04488524_1636 | Not Available | Positive | 1939513 - 1939950 | 16729.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

