Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_1617 | Not Available | Positive | 1910938 - 1911555 | 23363.3 |
| fecr family protein | SAMN04488524_1618 | Not Available | Positive | 1911625 - 1912803 | 44097.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1619 | Not Available | Positive | 1912972 - 1916226 | 120380.0 |
| starch-binding associating with outer membrane | SAMN04488524_1620 | Not Available | Positive | 1916244 - 1917683 | 53145.5 |
| hypothetical protein | SAMN04488524_1621 | Not Available | Positive | 1917691 - 1918158 | 17678.4 |
| zinc protease | SAMN04488524_1622 | Not Available | Positive | 1918167 - 1920989 | 106572.0 |
| hypothetical protein | SAMN04488524_1623 | Not Available | Positive | 1920995 - 1922749 | 64406.3 |
| calcineurin-like phosphoesterase | SAMN04488524_1624 | Not Available | Positive | 1922764 - 1924377 | 60561.5 |
| pif1-like helicase | SAMN04488524_1625 | Not Available | Positive | 1924476 - 1926392 | 71811.5 |
| superfamily ii dna or rna helicase, snf2 family | SAMN04488524_1626 | Not Available | Negative | 1926396 - 1929818 | 131686.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

