Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_1597 | Not Available | Positive | 1879127 - 1879699 | 22324.5 |
| fecr family protein | SAMN04488524_1598 | Not Available | Positive | 1879782 - 1880915 | 42376.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1599 | Not Available | Positive | 1881038 - 1884556 | 129067.0 |
| starch-binding associating with outer membrane | SAMN04488524_1600 | Not Available | Positive | 1884583 - 1886025 | 53725.0 |
| dehydrogenase (flavoprotein) | SAMN04488524_1601 | Not Available | Positive | 1886054 - 1887640 | 58787.4 |
| hypothetical protein | SAMN04488524_1602 | Not Available | Positive | 1887648 - 1889453 | 65085.8 |
| hypothetical protein | SAMN04488524_1603 | Not Available | Positive | 1889468 - 1891342 | 70203.0 |
| alpha-l-rhamnosidase | SAMN04488524_1604 | Not Available | Positive | 1891339 - 1893585 | 84365.8 |
| organic hydroperoxide reductase osmc/ohra | SAMN04488524_1605 | Not Available | Negative | 1893594 - 1894070 | 17725.1 |
| phospholipase c | SAMN04488524_1606 | Not Available | Negative | 1894132 - 1896666 | 94617.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

