Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, arac family | SAMN04488524_1587 | Not Available | Positive | 1859429 - 1860265 | 32986.9 |
| hydroxylysine kinase /5-phosphonooxy-l-lysine phospho-lyase apoenzyme | SAMN04488524_1588 | Not Available | Negative | 1860805 - 1863102 | 85644.1 |
| putative isomerase | SAMN04488524_1589 | Not Available | Negative | 1863099 - 1865060 | 74488.7 |
| beta-galactosidase | SAMN04488524_1590 | Not Available | Negative | 1865062 - 1868160 | 118283.0 |
| starch-binding associating with outer membrane | SAMN04488524_1591 | Not Available | Negative | 1868212 - 1869732 | 57483.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1592 | Not Available | Negative | 1869753 - 1872857 | 112696.0 |
| tpr repeat | SAMN04488524_1593 | Not Available | Negative | 1873012 - 1874619 | 61889.4 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04488524_1594 | Not Available | Negative | 1874692 - 1876146 | 53606.1 |
| fad dependent oxidoreductase | SAMN04488524_1595 | Not Available | Negative | 1876223 - 1877683 | 52781.4 |
| mfs transporter, acs family, hexuronate transporter | SAMN04488524_1596 | Not Available | Negative | 1877673 - 1878908 | 45098.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

