Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteinyl-trna synthetase | SAMN04488524_1557 | Not Available | Negative | 1829003 - 1830463 | 55149.8 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488524_1558 | Not Available | Negative | 1830482 - 1831591 | 42419.8 |
| membrane associated serine protease, rhomboid family | SAMN04488524_1559 | Not Available | Negative | 1831591 - 1832454 | 32165.5 |
| rhomboid-like protein | SAMN04488524_1560 | Not Available | Negative | 1832447 - 1833196 | 28089.0 |
| dna mismatch repair protein mutl | SAMN04488524_1561 | Not Available | Negative | 1833203 - 1835074 | 69609.0 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488524_1562 | Not Available | Positive | 1835113 - 1836996 | 69705.3 |
| isopenicillin n synthase | SAMN04488524_1563 | Not Available | Negative | 1836999 - 1837961 | 36272.9 |
| peptide-methionine (s)-s-oxide reductase | SAMN04488524_1564 | Not Available | Positive | 1838092 - 1838691 | 22638.1 |
| uncharacterized lipoprotein nlpe involved in copper resistance | SAMN04488524_1565 | Not Available | Positive | 1838780 - 1839250 | 17069.1 |
| alpha/beta hydrolase family protein | SAMN04488524_1566 | Not Available | Positive | 1839304 - 1840173 | 32880.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

