Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbp-type peptidyl-prolyl cis-trans isomerase | SAMN04488524_1517 | Not Available | Negative | 1782176 - 1783186 | 35967.6 |
| phosphoesterase recj domain-containing protein | SAMN04488524_1518 | Not Available | Negative | 1783222 - 1784232 | 37849.2 |
| nucleoside diphosphate kinase | SAMN04488524_1519 | Not Available | Positive | 1784350 - 1784769 | 15094.8 |
| fkbp-type peptidyl-prolyl cis-trans isomerase fklb | SAMN04488524_1520 | Not Available | Positive | 1784868 - 1785605 | 26282.9 |
| hypothetical protein | SAMN04488524_1521 | Not Available | Positive | 1785666 - 1785839 | 6184.97 |
| protein of unknown function | SAMN04488524_1522 | Not Available | Negative | 1785845 - 1786135 | 10850.6 |
| dna replication and repair protein recf | SAMN04488524_1523 | Not Available | Negative | 1786128 - 1787231 | 42612.5 |
| tetratricopeptide repeat-containing protein | SAMN04488524_1524 | Not Available | Positive | 1787390 - 1788061 | 24735.5 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04488524_1525 | Not Available | Positive | 1788170 - 1788670 | 18959.1 |
| nad-dependent deacetylase | SAMN04488524_1526 | Not Available | Positive | 1788675 - 1789355 | 25185.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

