Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a 3-o-deacylase (pagl) | SAMN04488524_1477 | Not Available | Negative | 1728449 - 1729576 | 42076.7 |
| uncharacterized conserved protein | SAMN04488524_1478 | Not Available | Negative | 1729602 - 1729823 | 8762.56 |
| hypothetical protein | SAMN04488524_1479 | Not Available | Positive | 1729915 - 1730550 | 23667.4 |
| aminopeptidase n | SAMN04488524_1480 | Not Available | Negative | 1730881 - 1732845 | 73738.4 |
| hypothetical protein | SAMN04488524_1481 | Not Available | Negative | 1732914 - 1733651 | 28007.0 |
| transcriptional regulator, spx/mgsr family | SAMN04488524_1482 | Not Available | Negative | 1733753 - 1734100 | 13157.8 |
| ghkl domain-containing protein | SAMN04488524_1483 | Not Available | Positive | 1734232 - 1735647 | 54101.6 |
| two component transcriptional regulator, lyttr family | SAMN04488524_1484 | Not Available | Positive | 1735656 - 1736342 | 25896.4 |
| signal transduction histidine kinase | SAMN04488524_1485 | Not Available | Positive | 1736442 - 1739930 | 130251.0 |
| chemotaxis protein methyltransferase cher | SAMN04488524_1486 | Not Available | Positive | 1739932 - 1740756 | 32065.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

