Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein | SAMN04488524_1407 | Not Available | Negative | 1666863 - 1668233 | 50600.3 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN04488524_1408 | Not Available | Positive | 1668321 - 1668938 | 23815.8 |
| aconitase | SAMN04488524_1409 | Not Available | Positive | 1669107 - 1671383 | 81523.0 |
| protein of unknown function | SAMN04488524_1410 | Not Available | Positive | 1671437 - 1672042 | 22053.5 |
| putative signal transducing protein | SAMN04488524_1411 | Not Available | Negative | 1672099 - 1672512 | 15316.5 |
| beta-glucosidase | SAMN04488524_1412 | Not Available | Negative | 1672547 - 1673905 | 51598.5 |
| muts domain v | SAMN04488524_1413 | Not Available | Negative | 1673921 - 1675717 | 67690.4 |
| 23s rrna (pseudouridine1915-n3)-methyltransferase | SAMN04488524_1414 | Not Available | Positive | 1675822 - 1676295 | 18127.1 |
| hypothetical protein | SAMN04488524_1415 | Not Available | Positive | 1676356 - 1676484 | 5130.43 |
| hypothetical protein | SAMN04488524_1416 | Not Available | Negative | 1676536 - 1677072 | 19061.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

