Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pap2 superfamily protein | SAMN04488524_1346 | Not Available | Positive | 1589139 - 1589885 | 26976.3 |
| hypothetical protein | SAMN04488524_1347 | Not Available | Positive | 1589920 - 1590909 | 36581.4 |
| phosphatidylglycerol lysyltransferase | SAMN04488524_1348 | Not Available | Positive | 1590955 - 1593537 | 97573.1 |
| type iv secretory pathway, virj component | SAMN04488524_1349 | Not Available | Positive | 1593550 - 1594929 | 50502.1 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488524_1350 | Not Available | Positive | 1595005 - 1595679 | 25096.5 |
| signal transduction histidine kinase | SAMN04488524_1351 | Not Available | Positive | 1595676 - 1596722 | 39750.1 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_1352 | Not Available | Positive | 1596779 - 1599184 | 90434.8 |
| iron complex outermembrane recepter protein | SAMN04488524_1353 | Not Available | Positive | 1599295 - 1601766 | 89283.5 |
| uncharacterized iron-regulated membrane protein | SAMN04488524_1354 | Not Available | Positive | 1601773 - 1602933 | 43344.8 |
| phosphoglycerol transferase mdob | SAMN04488524_1355 | Not Available | Negative | 1602969 - 1604927 | 74230.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

