Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transport system atp-binding protein | SAMN04488524_1316 | Not Available | Positive | 1562939 - 1563709 | 28722.5 |
| abc-2 type transport system permease protein | SAMN04488524_1317 | Not Available | Positive | 1563717 - 1564808 | 39580.3 |
| aquaporin z | SAMN04488524_1318 | Not Available | Positive | 1564899 - 1565591 | 23504.0 |
| enolase | SAMN04488524_1319 | Not Available | Positive | 1565740 - 1567035 | 46425.1 |
| hypothetical protein | SAMN04488524_1320 | Not Available | Positive | 1567119 - 1567310 | 7009.76 |
| cell division protein ftsb | SAMN04488524_1321 | Not Available | Positive | 1567331 - 1567630 | 12027.5 |
| uncharacterized membrane protein yeih | SAMN04488524_1322 | Not Available | Negative | 1567627 - 1568238 | 22404.4 |
| hypothetical protein | SAMN04488524_1323 | Not Available | Negative | 1568251 - 1570368 | 78596.8 |
| l,d-transpeptidase catalytic domain | SAMN04488524_1324 | Not Available | Positive | 1570418 - 1571152 | 27918.9 |
| fibronectin type iii domain-containing protein | SAMN04488524_1325 | Not Available | Negative | 1571195 - 1572499 | 47493.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

