Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f5/8 type c domain-containing protein | SAMN04488524_1306 | Not Available | Negative | 1549707 - 1550972 | 47455.4 |
| protein of unknown function | SAMN04488524_1307 | Not Available | Negative | 1550999 - 1552240 | 46455.3 |
| starch-binding associating with outer membrane | SAMN04488524_1308 | Not Available | Negative | 1552268 - 1554196 | 73289.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_1309 | Not Available | Negative | 1554209 - 1557739 | 131120.0 |
| fecr family protein | SAMN04488524_1310 | Not Available | Negative | 1557867 - 1559087 | 45210.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_1311 | Not Available | Negative | 1559217 - 1559837 | 24006.1 |
| ribosomal large subunit pseudouridine synthase d | SAMN04488524_1312 | Not Available | Negative | 1559944 - 1560630 | 25899.5 |
| ketopantoate hydroxymethyltransferase | SAMN04488524_1313 | Not Available | Negative | 1560630 - 1561445 | 29420.6 |
| hypothetical protein | SAMN04488524_1314 | Not Available | Negative | 1561541 - 1561708 | 6066.49 |
| carbamoyl-phosphate synthase small subunit | SAMN04488524_1315 | Not Available | Positive | 1561729 - 1562841 | 40915.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

