Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN04488524_0098 | Not Available | Positive | 139829 - 140539 | 27502.4 |
| l-ribulokinase | SAMN04488524_0099 | Not Available | Positive | 140628 - 142313 | 61216.4 |
| l-ribulose 5-phosphate 4-epimerase | SAMN04488524_0100 | Not Available | Positive | 142325 - 143023 | 25976.9 |
| l-arabinose isomerase | SAMN04488524_0101 | Not Available | Positive | 143045 - 144535 | 55532.3 |
| solute:na+ symporter, sss family | SAMN04488524_0102 | Not Available | Positive | 144542 - 146227 | 61053.1 |
| calcineurin-like phosphoesterase | SAMN04488524_0103 | Not Available | Negative | 146329 - 147222 | 33569.4 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_0104 | Not Available | Negative | 147375 - 148130 | 28376.7 |
| susd family protein | SAMN04488524_0105 | Not Available | Negative | 148142 - 149575 | 53188.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0106 | Not Available | Negative | 149587 - 152997 | 124000.0 |
| fecr family protein | SAMN04488524_0107 | Not Available | Negative | 153203 - 154348 | 42933.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

