Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_1296 | Not Available | Positive | 1537620 - 1538819 | 43865.6 |
| hypothetical protein | SAMN04488524_1297 | Not Available | Positive | 1538925 - 1539971 | 39418.6 |
| hypothetical protein | SAMN04488524_1298 | Not Available | Positive | 1539901 - 1542216 | 88995.4 |
| arac family transcriptional regulator, regulatory protein of adaptative response / methylated-dna-[protein]-cysteine methyltransferase | SAMN04488524_1299 | Not Available | Positive | 1542424 - 1543266 | 31434.7 |
| hypothetical protein | SAMN04488524_1300 | Not Available | Positive | 1543299 - 1543790 | 18060.6 |
| hypothetical protein | SAMN04488524_1301 | Not Available | Negative | 1543795 - 1546056 | 84999.1 |
| hypothetical protein | SAMN04488524_1302 | Not Available | Negative | 1546022 - 1546537 | 19214.7 |
| polygalacturonase | SAMN04488524_1303 | Not Available | Negative | 1546541 - 1548217 | 59950.2 |
| hypothetical protein | SAMN04488524_1304 | Not Available | Negative | 1548214 - 1548684 | 17784.4 |
| hypothetical protein | SAMN04488524_1305 | Not Available | Negative | 1548715 - 1549599 | 32643.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

