Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system substrate-binding protein | SAMN04488524_1276 | Not Available | Positive | 1505236 - 1506867 | 62180.9 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_1277 | Not Available | Negative | 1506868 - 1509312 | 88786.0 |
| leucyl-trna synthetase | SAMN04488524_1278 | Not Available | Negative | 1509504 - 1512314 | 107597.0 |
| h+/cl-antiporter clca | SAMN04488524_1279 | Not Available | Negative | 1512351 - 1513592 | 43906.9 |
| hypothetical protein | SAMN04488524_1280 | Not Available | Negative | 1513722 - 1514117 | 14443.3 |
| iron complex outermembrane recepter protein | SAMN04488524_1281 | Not Available | Positive | 1514370 - 1516436 | 76890.1 |
| hypothetical protein | SAMN04488524_1282 | Not Available | Positive | 1516486 - 1517232 | 27737.1 |
| sugar phosphate isomerase/epimerase | SAMN04488524_1283 | Not Available | Negative | 1517229 - 1519244 | 75837.9 |
| nhl repeat-containing protein | SAMN04488524_1284 | Not Available | Negative | 1519255 - 1520580 | 45531.3 |
| hypothetical protein | SAMN04488524_1285 | Not Available | Negative | 1520593 - 1521879 | 45782.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

