Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_1194 | Not Available | Negative | 1407710 - 1408627 | 34392.8 |
| fecr family protein | SAMN04488524_1195 | Not Available | Negative | 1408642 - 1409796 | 42563.6 |
| rna polymerase, sigma subunit, ecf family | SAMN04488524_1196 | Not Available | Negative | 1409852 - 1410448 | 23090.5 |
| hypothetical protein | SAMN04488524_1198 | Not Available | Positive | 1411464 - 1411961 | 18856.1 |
| peptidase m16 inactive domain-containing protein | SAMN04488524_1199 | Not Available | Positive | 1412133 - 1412699 | 20453.2 |
| virulence protein rhum family protein | SAMN04488524_1200 | Not Available | Positive | 1412982 - 1413281 | 11406.7 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488524_1202 | Not Available | Positive | 1413755 - 1414663 | 35714.2 |
| hypothetical protein | SAMN04488524_1203 | Not Available | Negative | 1414774 - 1414977 | 7732.39 |
| hypothetical protein | SAMN04488524_1204 | Not Available | Negative | 1415293 - 1415778 | 18340.2 |
| hypothetical protein | SAMN04488524_1205 | Not Available | Positive | 1415854 - 1416090 | 9283.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

