Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN04488524_1092 | Not Available | Positive | 1295005 - 1295886 | 33459.2 |
| hypothetical protein | SAMN04488524_1093 | Not Available | Positive | 1296259 - 1297263 | 37854.2 |
| hypothetical protein | SAMN04488524_1094 | Not Available | Negative | 1297337 - 1297813 | 18480.0 |
| hypothetical protein | SAMN04488524_1095 | Not Available | Positive | 1297851 - 1298408 | 19990.8 |
| protein of unknown function | SAMN04488524_1096 | Not Available | Positive | 1298513 - 1298743 | 8600.32 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488524_1097 | Not Available | Positive | 1298747 - 1299337 | 23254.1 |
| hypothetical protein | SAMN04488524_1098 | Not Available | Positive | 1299406 - 1299894 | 18001.5 |
| hypothetical protein | SAMN04488524_1099 | Not Available | Negative | 1299995 - 1300471 | 18403.1 |
| hupe / urej protein | SAMN04488524_1100 | Not Available | Positive | 1300535 - 1301122 | 21924.5 |
| aminopeptidase n | SAMN04488524_1101 | Not Available | Positive | 1301145 - 1303196 | 78768.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

