Flavobacterium pectinovorum strain DSM 6368

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium pectinovorum strain DSM 6368 is a Gram-negative, aerobic bacterium characterized by its rod shape. This strain is motile, possessing true flagella that facilitate its movement. Genetically, it contains a single replicon, indicating a streamlined genomic architecture. The strain is cataloged under the accession number FRBX00000000.1. The aerobic nature of Flavobacterium pectinovorum suggests that it thrives in oxygen-rich environments, which is typical for many members of the Flavobacterium genus. These bacteria are often associated with the decomposition of organic matter, playing a significant role in nutrient cycling within various ecosystems. Their ability to degrade pectin, a polysaccharide found in plant cell walls, positions them as important contributors to the breakdown of plant materials in soil and aquatic environments. The motility provided by flagella may enhance the strain's ability to locate and colonize suitable niches where organic materials are abundant, thereby influencing microbial community dynamics. Through these interactions, Flavobacterium pectinovorum strain DSM 6368 may significantly affect the ecological balance in its habitat, supporting the growth of other microorganisms and contributing to soil health or aquatic ecosystem function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium pectinovorum
Strainstrain DSM 6368

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium pectinovorum strain DSM 6368
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium pectinovorum strain DSM 6368 genome assembly,

Gene Summary

Adenine Count

1882930 bp

Thymine Count

1844919 bp

Guanine Count

973747 bp

Cytosine Count

908918 bp

Genome Length

5610979 bp

Protein-coding Genes

4642 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative oxidoreductaseSAMN05444387_0882Not AvailablePositive1018249 - 101867415868.8
starvation-inducible dna-binding proteinSAMN05444387_0883Not AvailablePositive1018689 - 101916218529.1
uncharacterized membrane protein yoak, upf0700 familySAMN05444387_0884Not AvailablePositive1019180 - 101986325298.8
two-component sensor histidine kinase, contains hiska and hatpase domainsSAMN05444387_0885Not AvailablePositive1019887 - 102091239794.5
dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domainsSAMN05444387_0886Not AvailablePositive1020916 - 102228351282.5
hypothetical proteinSAMN05444387_0887Not AvailablePositive1022309 - 102265913167.7
formate hydrogenlyase transcriptional activatorSAMN05444387_0888Not AvailablePositive1022715 - 102428359000.5
transcriptional regulator, hxlr familySAMN05444387_0889Not AvailableNegative1024385 - 102475613894.1
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN05444387_0890Not AvailablePositive1024838 - 102571630863.9
mechanosensitive ion channelSAMN05444387_0891Not AvailableNegative1026108 - 102848689472.4

Displaying genes 871 – 880 of 4699 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.