Flavobacterium pectinovorum strain DSM 6368

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium pectinovorum strain DSM 6368 is a Gram-negative, aerobic bacterium characterized by its rod shape. This strain is motile, possessing true flagella that facilitate its movement. Genetically, it contains a single replicon, indicating a streamlined genomic architecture. The strain is cataloged under the accession number FRBX00000000.1. The aerobic nature of Flavobacterium pectinovorum suggests that it thrives in oxygen-rich environments, which is typical for many members of the Flavobacterium genus. These bacteria are often associated with the decomposition of organic matter, playing a significant role in nutrient cycling within various ecosystems. Their ability to degrade pectin, a polysaccharide found in plant cell walls, positions them as important contributors to the breakdown of plant materials in soil and aquatic environments. The motility provided by flagella may enhance the strain's ability to locate and colonize suitable niches where organic materials are abundant, thereby influencing microbial community dynamics. Through these interactions, Flavobacterium pectinovorum strain DSM 6368 may significantly affect the ecological balance in its habitat, supporting the growth of other microorganisms and contributing to soil health or aquatic ecosystem function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium pectinovorum
Strainstrain DSM 6368

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium pectinovorum strain DSM 6368
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium pectinovorum strain DSM 6368 genome assembly,

Gene Summary

Adenine Count

1882930 bp

Thymine Count

1844919 bp

Guanine Count

973747 bp

Cytosine Count

908918 bp

Genome Length

5610979 bp

Protein-coding Genes

4642 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-l-fucosidaseSAMN05444387_0004Not AvailablePositive1898 - 399779403.0
16s ribosomal rna . bacterial ssuNot AvailableNot AvailablePositive3720 - 523718.01
glucosamine-6-phosphate deaminaseSAMN05444387_0005Not AvailablePositive4142 - 605572736.5
two component transcriptional regulator, lyttr familySAMN05444387_0006Not AvailableNegative6488 - 720127359.4
ghkl domain-containing proteinSAMN05444387_0007Not AvailableNegative7269 - 832741599.3
alpha-1,2-mannosidase, putativeSAMN05444387_0008Not AvailablePositive8449 - 1069284236.9
na+/proline symporterSAMN05444387_0009Not AvailablePositive10727 - 1260470355.0
beta-1,4-mannooligosaccharide/beta-1, 4-mannosyl-n-acetylglucosamine phosphorylaseSAMN05444387_0010Not AvailablePositive12807 - 1377236392.0
carbohydrate family 9 binding domain-likeSAMN05444387_0011Not AvailablePositive13781 - 1485141745.2
uncharacterized lipoprotein yddw, upf0748 familySAMN05444387_0012Not AvailablePositive14859 - 1593841501.6

Displaying genes 11 – 20 of 4699 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.