Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter caeni |
| Strain | strain DSM 16990 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2294423 bp
Thymine Count
2291506 bp
Guanine Count
1650302 bp
Cytosine Count
1590094 bp
Genome Length
7828785 bp
Protein-coding Genes
6685 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted oxidoreductase | SAMN04488522_10166 | Not Available | Positive | 64793 - 65830 | 38504.4 |
| arac-type dna-binding protein | SAMN04488522_10167 | Not Available | Positive | 65839 - 66726 | 34174.7 |
| enoyl-coa hydratase/carnithine racemase | SAMN04488522_10168 | Not Available | Negative | 66810 - 67664 | 30930.3 |
| transcriptional regulator, hxlr family | SAMN04488522_10169 | Not Available | Positive | 67751 - 68134 | 14781.8 |
| peroxiredoxin | SAMN04488522_10170 | Not Available | Negative | 68254 - 69429 | 42922.3 |
| hypothetical protein | SAMN04488522_10171 | Not Available | Negative | 69517 - 69660 | 5266.68 |
| ragb/susd domain-containing protein | SAMN04488522_10172 | Not Available | Negative | 69670 - 71085 | 52990.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488522_10173 | Not Available | Negative | 71097 - 74612 | 129467.0 |
| fecr family protein | SAMN04488522_10174 | Not Available | Negative | 74731 - 75894 | 43724.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488522_10175 | Not Available | Negative | 76021 - 76611 | 22825.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
