Pedobacter caeni strain DSM 16990

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter caeni strain DSM 16990 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. It is non-motile and possesses flagella, although its non-motility suggests that it does not utilize these structures for movement in its environment. The strain thrives optimally at a temperature of 29°C, placing it within the mesophilic range, which typically spans from 20 to 45°C. This bacterium has a single replicon and is classified as non-spore-forming, indicating its reliance on vegetative growth rather than sporulation for survival in various conditions. The genetic information for Pedobacter caeni strain DSM 16990 can be accessed via the accession number FQUQ00000000.1, providing a resource for further genomic studies and applications. Ecologically, the characteristics of Pedobacter caeni suggest its potential role in soil environments, where aerobic conditions prevail and temperature ranges are often mesophilic. Its non-motility may imply a lifestyle that relies on nutrient diffusion in its habitat rather than active movement, which could influence its interactions with other microorganisms and its role in nutrient cycling. Overall, Pedobacter caeni strain DSM 16990 exemplifies the diversity of bacterial life adapted to specific ecological niches within the mesophilic temperature range.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter caeni
Strainstrain DSM 16990

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter caeni strain DSM 16990
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter caeni strain DSM 16990 genome assembly, contig:

Gene Summary

Adenine Count

2294423 bp

Thymine Count

2291506 bp

Guanine Count

1650302 bp

Cytosine Count

1590094 bp

Genome Length

7828785 bp

Protein-coding Genes

6685 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
predicted purr-regulated permease permSAMN04488522_10156Not AvailableNegative55913 - 5703140994.5
trna modification gtpase trmeSAMN04488522_10157Not AvailablePositive57164 - 5853449584.6
hypothetical proteinSAMN04488522_10158Not AvailableNegative58933 - 5942418860.2
hypothetical proteinSAMN04488522_10159Not AvailablePositive59962 - 601085255.31
cubico group peptidase, beta-lactamase class c familySAMN04488522_10160Not AvailableNegative60533 - 6192152531.1
hypothetical proteinSAMN04488522_10161Not AvailableNegative62029 - 6247516500.5
hypothetical proteinSAMN04488522_10162Not AvailableNegative62560 - 6300016307.4
rna polymerase sigma-70 factor, ecf subfamilySAMN04488522_10163Not AvailableNegative62990 - 6356822245.8
hypothetical proteinSAMN04488522_10164Not AvailablePositive63820 - 640869762.73
hypothetical proteinSAMN04488522_10165Not AvailablePositive64137 - 6459517326.8

Displaying genes 61 – 70 of 6748 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.