Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter caeni |
| Strain | strain DSM 16990 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2294423 bp
Thymine Count
2291506 bp
Guanine Count
1650302 bp
Cytosine Count
1590094 bp
Genome Length
7828785 bp
Protein-coding Genes
6685 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted purr-regulated permease perm | SAMN04488522_10156 | Not Available | Negative | 55913 - 57031 | 40994.5 |
| trna modification gtpase trme | SAMN04488522_10157 | Not Available | Positive | 57164 - 58534 | 49584.6 |
| hypothetical protein | SAMN04488522_10158 | Not Available | Negative | 58933 - 59424 | 18860.2 |
| hypothetical protein | SAMN04488522_10159 | Not Available | Positive | 59962 - 60108 | 5255.31 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488522_10160 | Not Available | Negative | 60533 - 61921 | 52531.1 |
| hypothetical protein | SAMN04488522_10161 | Not Available | Negative | 62029 - 62475 | 16500.5 |
| hypothetical protein | SAMN04488522_10162 | Not Available | Negative | 62560 - 63000 | 16307.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488522_10163 | Not Available | Negative | 62990 - 63568 | 22245.8 |
| hypothetical protein | SAMN04488522_10164 | Not Available | Positive | 63820 - 64086 | 9762.73 |
| hypothetical protein | SAMN04488522_10165 | Not Available | Positive | 64137 - 64595 | 17326.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
