Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter caeni |
| Strain | strain DSM 16990 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2294423 bp
Thymine Count
2291506 bp
Guanine Count
1650302 bp
Cytosine Count
1590094 bp
Genome Length
7828785 bp
Protein-coding Genes
6685 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488522_10146 | Not Available | Positive | 46538 - 47119 | 21503.0 |
| nagd protein | SAMN04488522_10147 | Not Available | Positive | 47295 - 48044 | 27186.9 |
| arginine decarboxylase | SAMN04488522_10148 | Not Available | Negative | 48122 - 49513 | 53961.4 |
| arginase | SAMN04488522_10149 | Not Available | Positive | 49617 - 50567 | 35030.2 |
| arginyl-trna synthetase | SAMN04488522_10150 | Not Available | Positive | 50571 - 52352 | 66797.1 |
| hypothetical protein | SAMN04488522_10151 | Not Available | Positive | 52412 - 52891 | 18989.3 |
| d-alanyl-d-alanine carboxypeptidase | SAMN04488522_10152 | Not Available | Negative | 52893 - 54119 | 45768.7 |
| hypothetical protein | SAMN04488522_10153 | Not Available | Negative | 54123 - 54728 | 22988.8 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488522_10154 | Not Available | Negative | 54791 - 55363 | 21903.5 |
| uncharacterized membrane protein | SAMN04488522_10155 | Not Available | Negative | 55482 - 55838 | 13141.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
