Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter caeni |
| Strain | strain DSM 16990 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2294423 bp
Thymine Count
2291506 bp
Guanine Count
1650302 bp
Cytosine Count
1590094 bp
Genome Length
7828785 bp
Protein-coding Genes
6685 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488522_10136 | Not Available | Negative | 35513 - 38149 | 100778.0 |
| glutaryl-coa dehydrogenase | SAMN04488522_10137 | Not Available | Negative | 38172 - 39362 | 43754.9 |
| dihydroneopterin aldolase | SAMN04488522_10138 | Not Available | Positive | 39497 - 39886 | 14609.5 |
| glycolate oxidase | SAMN04488522_10139 | Not Available | Positive | 39982 - 41379 | 50892.2 |
| two component transcriptional regulator, winged helix family | SAMN04488522_10140 | Not Available | Positive | 41523 - 42233 | 26203.1 |
| signal transduction histidine kinase | SAMN04488522_10141 | Not Available | Positive | 42236 - 43597 | 51542.7 |
| hypothetical protein | SAMN04488522_10142 | Not Available | Positive | 43835 - 44317 | 18155.9 |
| putative membrane protein | SAMN04488522_10143 | Not Available | Positive | 44338 - 45270 | 36107.1 |
| acyl-coa thioester hydrolase | SAMN04488522_10144 | Not Available | Negative | 45405 - 45896 | 18970.7 |
| hsp20 family protein | SAMN04488522_10145 | Not Available | Positive | 45973 - 46407 | 16401.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
