Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter caeni |
| Strain | strain DSM 16990 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2294423 bp
Thymine Count
2291506 bp
Guanine Count
1650302 bp
Cytosine Count
1590094 bp
Genome Length
7828785 bp
Protein-coding Genes
6685 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas domain s-box-containing protein | SAMN04488522_10126 | Not Available | Positive | 26300 - 27406 | 42664.2 |
| response regulator receiver domain-containing protein | SAMN04488522_10127 | Not Available | Positive | 27403 - 27837 | 16535.8 |
| transcriptional regulator, laci family | SAMN04488522_10128 | Not Available | Positive | 27869 - 28882 | 38488.5 |
| phosphoglucomutase | SAMN04488522_10129 | Not Available | Negative | 28892 - 30625 | 63638.9 |
| aspartate kinase | SAMN04488522_10130 | Not Available | Positive | 30762 - 32075 | 48587.6 |
| hypothetical protein | SAMN04488522_10131 | Not Available | Negative | 32085 - 32261 | 7189.23 |
| diaminopimelate decarboxylase | SAMN04488522_10132 | Not Available | Positive | 32263 - 33420 | 42972.3 |
| methyltransferase domain-containing protein | SAMN04488522_10133 | Not Available | Negative | 33507 - 34127 | 23624.9 |
| hypothetical protein | SAMN04488522_10134 | Not Available | Negative | 34148 - 35032 | 32779.1 |
| activator of hsp90 atpase homolog 1-like protein | SAMN04488522_10135 | Not Available | Negative | 35146 - 35526 | 14714.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
