Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter caeni |
| Strain | strain DSM 16990 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2294423 bp
Thymine Count
2291506 bp
Guanine Count
1650302 bp
Cytosine Count
1590094 bp
Genome Length
7828785 bp
Protein-coding Genes
6685 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type multidrug transport system, atpase component | SAMN04488522_10116 | Not Available | Negative | 15865 - 16737 | 31895.8 |
| asma family protein | SAMN04488522_10117 | Not Available | Positive | 16889 - 19333 | 90686.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488522_10118 | Not Available | Positive | 19453 - 19983 | 20860.4 |
| hypothetical protein | SAMN04488522_10119 | Not Available | Positive | 20054 - 21331 | 46758.3 |
| hypothetical protein | SAMN04488522_10120 | Not Available | Positive | 21375 - 21830 | 15656.4 |
| acetyltransferase (gnat) domain-containing protein | SAMN04488522_10121 | Not Available | Negative | 21876 - 22403 | 20599.7 |
| osmotically inducible protein osmc | SAMN04488522_10122 | Not Available | Positive | 22560 - 22970 | 14354.9 |
| hypothetical protein | SAMN04488522_10123 | Not Available | Negative | 23074 - 23736 | 25328.7 |
| glutamate 5-kinase | SAMN04488522_10124 | Not Available | Positive | 23858 - 24892 | 36805.7 |
| glutamate-5-semialdehyde dehydrogenase | SAMN04488522_10125 | Not Available | Positive | 24900 - 26150 | 45627.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
