Acidaminococcus fermentans strain pGA-4

Coccusanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Negativicutes

Order

Acidaminococcales

Family

Acidaminococcaceae

Genus

Acidaminococcus

Description

Acidaminococcus fermentans strain pGA-4 is a Gram-negative coccus that exhibits strict anaerobic growth requirements. This microbe is part of a genus known for its ability to ferment amino acids, which plays an important role in various ecological niches, particularly in anaerobic environments such as the human gastrointestinal tract. The spherical morphology of Acidaminococcus fermentans indicates its adaptation to life in low-oxygen conditions, where it likely participates in the degradation of organic matter and the fermentation of nutrients. The anaerobic nature of this strain suggests its potential involvement in metabolic pathways that contribute to the overall microbial community dynamics within its habitat. By fermenting amino acids, Acidaminococcus fermentans strain pGA-4 not only generates energy for its own growth but may also influence the availability of nutrients for other anaerobic microorganisms, thereby shaping the microbial ecosystem. Furthermore, the activity of Acidaminococcus fermentans in amino acid fermentation may play a role in maintaining gut health by contributing to the production of short-chain fatty acids, which are known to have beneficial effects on host metabolism and immune function. This highlights the potential significance of Acidaminococcus fermentans strain pGA-4 in both microbial ecology and health-related aspects of anaerobic environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassNegativicutes
OrderAcidaminococcales
FamilyAcidaminococcaceae
GenusAcidaminococcus
SpeciesAcidaminococcus fermentans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acidaminococcus fermentans strain pGA-4

Accession NumberFOWJ00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2107 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Prga-formyltransferaseSAMN02910455_01687Not Available-1792066 - 179300434103.5
Riia-riib membrane-associated proteinSAMN02910455_01688Not Available-1793001 - 179347717171.7
Dna-binding hth domain-containing proteinSAMN02910455_01689Not Available-1793841 - 17940237180.7
hypothetical proteinSAMN02910455_01690Not Available-1794245 - 179482621339.5
Hypothetical proteinSAMN02910455_01691Not Available-1794832 - 179542822242.0
hypothetical proteinSAMN02910455_01692Not Available-1795388 - 179574113164.0
hypothetical proteinSAMN02910455_01693Not Available-1795714 - 179599510511.9
Short tail fiber proteinSAMN02910455_01694Not Available-1796077 - 179674223599.8
hypothetical proteinSAMN02910455_01695Not Available-1796739 - 17968734947.03
hypothetical proteinSAMN02910455_01696Not Available-1796866 - 179730315968.4

Displaying genes 1 – 10 of 2200 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

278 records
Metabolite IDMetabolite nameStructureCAS number
BASm00031962-dehydro-3-deoxy-D-glucarateC6H6O7Chemical structure of 2-dehydro-3-deoxy-D-glucarateNot available
Average190.108Da
Monoisotopic190.0124497Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0003317S-methyl-L-methionineC6H14NO2SChemical structure of S-methyl-L-methionine4727-40-6
Average164.246Da
Monoisotopic164.074524387Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm00036954-phospho-D-erythronateC4H6O8PChemical structure of 4-phospho-D-erythronateNot available
Average213.059Da
Monoisotopic212.9816749Da
BASm0003810propanoyl phosphateC3H5O5PChemical structure of propanoyl phosphate121-69-7
Average152.043Da
Monoisotopic151.9885574Da
BASm0003903D-glycero-D-manno-heptose 1-phosphateC7H13O10PChemical structure of D-glycero-D-manno-heptose 1-phosphateNot available
Average288.1459Da
Monoisotopic288.024633148Da
BASm0003926sirohemeC42H36FeN4O16Not available52553-42-1
Average908.611Da
Monoisotopic908.151956Da
BASm0003987cob(I)alaminC62H88CoN13O14PChemical structure of cob(I)alamin18534-66-2
Average1329.3478Da
Monoisotopic1328.564331Da

Displaying 21–30 of 278 metabolites