Acidaminococcus fermentans strain pGA-4

CoccusNon-motileanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Negativicutes

Order

Acidaminococcales

Family

Acidaminococcaceae

Genus

Acidaminococcus

Description

Acidaminococcus fermentans strain pGA-4 is a Gram-negative, anaerobic coccus that thrives in the gut environment. This organism is characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures typical of warm-blooded hosts. It is non-motile and exhibits a free-living biotic relationship, suggesting that it does not depend on a host for its survival, but rather occupies a niche within the gastrointestinal tract. The strain has a single replicon, which is a feature often associated with prokaryotic organisms that can replicate their genetic material independently. Acidaminococcus fermentans has been identified in association with Bos, indicating its presence in the gut microbiota of cattle. The gut habitat is crucial for this strain, as it likely plays a role in the fermentation processes occurring in the digestive system of ruminants. The ecological insight provided by the existence of Acidaminococcus fermentans strain pGA-4 highlights the importance of gut microbiota in the digestive efficiency and overall health of its bovine hosts. By participating in anaerobic fermentation, this strain may contribute to the breakdown of complex carbohydrates, thereby aiding in nutrient absorption and influencing the metabolic processes within the gut ecosystem. Such interactions underscore the role of specific microorganisms in maintaining the balance and functionality of gut microbiomes in livestock. The accession number for this strain is FOWJ00000000.1, which can be used for further reference and research into its genetic and phenotypic characteristics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassNegativicutes
OrderAcidaminococcales
FamilyAcidaminococcaceae
GenusAcidaminococcus
SpeciesAcidaminococcus fermentans
Strainstrain pGA-4

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatgut
Biotic relationshipFree living
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acidaminococcus fermentans strain pGA-4 genome assembly, contig:

Gene Summary

Adenine Count

510915 bp

Thymine Count

525834 bp

Guanine Count

645158 bp

Cytosine Count

661070 bp

Genome Length

2344887 bp

Protein-coding Genes

2107 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN02910455_00032Not AvailablePositive38286 - 3926335349.8
ribonuclease jSAMN02910455_00033Not AvailablePositive39484 - 4116061374.7
dna segregation atpase ftsk/spoiiie, s-dna-t familySAMN02910455_00034Not AvailablePositive41195 - 4351684456.4
protein rodz, contains xre-like hth and duf4115 domainsSAMN02910455_00035Not AvailablePositive43562 - 4507354474.1
ribosomal protein s12 methylthiotransferaseSAMN02910455_00036Not AvailablePositive45169 - 4649750416.3
nicotinamide-nucleotide amidaseSAMN02910455_00037Not AvailablePositive46503 - 4774744964.6
atp-dependent rna helicase deadSAMN02910455_00038Not AvailablePositive47779 - 4941361034.1
gtp-binding protein hflxSAMN02910455_00039Not AvailablePositive49433 - 5124767250.6
cystathionine beta-lyase family protein involved in aluminum resistanceSAMN02910455_00040Not AvailablePositive51302 - 5254344473.4
repressor lexaSAMN02910455_00041Not AvailableNegative52687 - 5333424105.9

Displaying genes 81 – 90 of 2200 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

278 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001987trans-glutaconateC5H4O4Chemical structure of trans-glutaconateNot available
Average128.084Da
Monoisotopic128.0120558Da

Displaying 1–10 of 278 metabolites

Health Effects

No health effects information available for this bacterium.