Acidaminococcus fermentans strain pGA-4

CoccusNon-motileanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Negativicutes

Order

Acidaminococcales

Family

Acidaminococcaceae

Genus

Acidaminococcus

Description

Acidaminococcus fermentans strain pGA-4 is a Gram-negative, anaerobic coccus that thrives in the gut environment. This organism is characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures typical of warm-blooded hosts. It is non-motile and exhibits a free-living biotic relationship, suggesting that it does not depend on a host for its survival, but rather occupies a niche within the gastrointestinal tract. The strain has a single replicon, which is a feature often associated with prokaryotic organisms that can replicate their genetic material independently. Acidaminococcus fermentans has been identified in association with Bos, indicating its presence in the gut microbiota of cattle. The gut habitat is crucial for this strain, as it likely plays a role in the fermentation processes occurring in the digestive system of ruminants. The ecological insight provided by the existence of Acidaminococcus fermentans strain pGA-4 highlights the importance of gut microbiota in the digestive efficiency and overall health of its bovine hosts. By participating in anaerobic fermentation, this strain may contribute to the breakdown of complex carbohydrates, thereby aiding in nutrient absorption and influencing the metabolic processes within the gut ecosystem. Such interactions underscore the role of specific microorganisms in maintaining the balance and functionality of gut microbiomes in livestock. The accession number for this strain is FOWJ00000000.1, which can be used for further reference and research into its genetic and phenotypic characteristics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassNegativicutes
OrderAcidaminococcales
FamilyAcidaminococcaceae
GenusAcidaminococcus
SpeciesAcidaminococcus fermentans
Strainstrain pGA-4

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatgut
Biotic relationshipFree living
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acidaminococcus fermentans strain pGA-4 genome assembly, contig:

Gene Summary

Adenine Count

510915 bp

Thymine Count

525834 bp

Guanine Count

645158 bp

Cytosine Count

661070 bp

Genome Length

2344887 bp

Protein-coding Genes

2107 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exonuclease, dna polymerase iii, epsilon subunit familySAMN02910455_01307Not AvailablePositive1418228 - 141927439656.0
site-specific recombinase xerdSAMN02910455_01308Not AvailablePositive1419398 - 142047440454.9
replication restart dna helicase priaSAMN02910455_01309Not AvailableNegative1420679 - 142307289377.8
methionine adenosyltransferaseSAMN02910455_01310Not AvailableNegative1423074 - 142425242603.7
[citrate (pro-3s)-lyase] ligaseSAMN02910455_01312Not AvailableNegative1424472 - 142551839493.9
uncharacterised acr, ykgg family cog1556SAMN02910455_01313Not AvailableNegative1425610 - 142623923255.9
rubrerythrinSAMN02910455_01314Not AvailableNegative1426328 - 142687620228.0
precorrin-2 dehydrogenase / sirohydrochlorin ferrochelataseSAMN02910455_01315Not AvailableNegative1427024 - 142760221584.3
uroporphyrinogen iii methyltransferase / synthaseSAMN02910455_01316Not AvailableNegative1427599 - 142906853521.7
hydroxymethylbilane synthaseSAMN02910455_01317Not AvailableNegative1429061 - 142992132082.4

Displaying genes 1341 – 1350 of 2200 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

278 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001987trans-glutaconateC5H4O4Chemical structure of trans-glutaconateNot available
Average128.084Da
Monoisotopic128.0120558Da

Displaying 1–10 of 278 metabolites

Health Effects

No health effects information available for this bacterium.